Alignment
| Sequences analysed in total |
447299373 |
| Single-end alignments with a unique best hit |
253328964 |
| Sequences without alignments under any condition |
145567291 |
| Sequences that did not map uniquely |
48403118 |
| Genomic sequence context not extractable (edges of chromosomes) |
17 |
Cytosine Methylation
| Total C's analysed |
5232303260 |
| Methylated C's in CpG context |
114439471 |
| Methylated C's in CHG context |
47636473 |
| Methylated C's in CHH context |
118416606 |
| Unmethylated C's in CpG context |
164043167 |
| Unmethylated C's in CHG context |
1204069440 |
| Unmethylated C's in CHH context |
3583698103 |
| Percentage methylation (CpG context) |
41.1% |
| Percentage methylation (CHG context) |
3.8% |
| Percentage methylation (CHH context) |
3.2% |
Alignment to Individual Bisulfite Strands
| OT |
0 |
original top strand |
| CTOT |
120197022 |
complementary to original top strand |
| CTOB |
133131942 |
complementary to original bottom strand |
| OB |
0 |
original bottom strand |
Deduplication
| Alignments analysed |
253328947 |
| Unique alignments |
101795844 |
| Duplicates removed |
151533103 |
| Duplicated alignments were found at 54946655 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
2044785808 |
| Methylated C's in CpG context |
45906670 |
| Methylated C's in CHG context |
15967306 |
| Methylated C's in CHH context |
44686080 |
| Unmethylated C's in CpG context |
52383416 |
| Unmethylated C's in CHG context |
461876522 |
| Unmethylated C's in CHH context |
1423965814 |
| Percentage methylation (CpG context) |
46.7% |
| Percentage methylation (CHG context) |
3.3% |
| Percentage methylation (CHH context) |
3.0% |
M-Bias Plot
